ParvoDB ID PV000679 GenBank Accession KJ634207
Subfamily Parvovirinae Genus Bocaparvovirus
Species Bocaparvovirus primate1 Sequence Length 5099
Definition Human bocavirus 1 isolate 307AR09, complete genome. Submission Date 2014-03-27
Strain Name 307AR09 Sampling Date 2009
Sampling Country Argentina Location Argentina
Submitted By Cardozo Tomas,A., Ghietto,L.M., Insfran,C. and Adamo,M.P. Submitting Institution Instituto de Virologia, Universidad Nacional de Cordoba, Calle Enf. Gordillo Gomez S/N - Ciudad Universitaria, Cordoba, Cordoba 5016, Argentina
Original Host Homo sapiens Sample Type respiratory secretion
Standardized Host Name Homo sapiens Host Tax Rank species
Standardized Host Class Mammalia Standardized Host Order Primates
Environmental Origin - N/A - Reagent Origin - N/A -
Number Reagent/Consumables Purpose PMID/Url Reference
1 Secreción respiratoria (aspirado nasofaríngeo) Used as a sample obtained from a pediatric patient for isolation of HBoV1. 26913800 View Related Publication
2 Buffer de guanidina Used in the extraction of nucleic acids.
3 Precipitación con sílica Used for nucleic acids precipitation.
4 Buffer TE (10:1) Used to resuspend the nucleic acid extract.
5 PCR reactivos de la firma Invitrogen Initial reagents for PCR including 2.5 mM MgCl2, 0.8 mM equimolar dNTPs mix, 0.02 U/μL Taq DNA polymerase, and 0.4 μM of each primer.
6 Enzima Platinum Taq DNA Polymerase High Fidelity (Invitrogen) Used in the final PCR assays for genome sequencing with high fidelity.
7 Poliacrilamida al 8.5% Used in gels for visualizing PCR products stained with silver nitrate.
8 Gel de agarosa al 1.5% Used for visualizing PCR products stained with ethidium bromide.
9 Qiagen PCR cleanup kit Used for purifying amplification products before sequencing.
10 BigDye Terminator v. 3.1 (Applied Biosystems) Used for bidirectional sequencing of amplified fragments.
11 Secuencias representativas de GenBank Used for the alignment and design of primers.